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Date:         Thu, 5 Mar 2009 09:44:14 -0500
Reply-To:     Kevin Viel <citam.sasl@GMAIL.COM>
Sender:       "SAS(r) Discussion" <SAS-L@LISTSERV.UGA.EDU>
From:         Kevin Viel <citam.sasl@GMAIL.COM>
Subject:      Re: I wanrt to use all variables in macro for the same process
              but something is wrong !!

On Thu, 5 Mar 2009 09:21:49 -0500, Ian Whitlock <iw1sas@GMAIL.COM> wrote:

> if x in ( "AA" ... "CC" ) then > x = cats(substr(x,1,1),"/",substr(x,2)) ;

>It is far from clear why you might need a slash....

Genotypes. Unfortunately, some variety of representations exists including 0/1, 1/1, A/Y, and A/ or A.

By the end of the next decade, we most likely will see whole genome resequencing. Three billion base-pairs for each patient, plus any mitochrondrial DNA, plus any somatic mutations (Nature. 2007 Mar 8;446(7132):145-6. http://www.nature.com/nature/journal/v446/n7132/abs/nature05610.html), plus expression data, plus.....

Needless to say, study sizes with enlarge greatly.

I created a small suite using SAS to genotype using *.ab1 files and database the results. My guess is that we will see many more questions of this type in the future :)

Very, very exciting times!!!!


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